Studying the Effects and Competitive Mechanisms of YOYO-1 on the Binding Characteristics of DOX and DNA Molecules Based on Surface-Enhanced Raman Spectroscopy and Molecular Docking Techniques | |
Li, Yanjie1; Li, Zhiwei1; Yun, Penglun1; Sun, Dan1; Niu, Yong1; Yao, Baoli2![]() | |
作者部门 | 瞬态光学研究室 |
2024-04 | |
发表期刊 | INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
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ISSN | 1661-6596;1422-0067 |
卷号 | 25期号:7 |
产权排序 | 2 |
摘要 | Revealing the interaction mechanisms between anticancer drugs and target DNA molecules at the single-molecule level is a hot research topic in the interdisciplinary fields of biophysical chemistry and pharmaceutical engineering. When fluorescence imaging technology is employed to carry out this kind of research, a knotty problem due to fluorescent dye molecules and drug molecules acting on a DNA molecule simultaneously is encountered. In this paper, based on self-made novel solid active substrates NpAA/(ZnO-ZnCl2)/AuNPs, we use a surface-enhanced Raman spectroscopy method, inverted fluorescence microscope technology, and a molecular docking method to investigate the action of the fluorescent dye YOYO-1 and the drug DOX on calf thymus DNA (ctDNA) molecules and the influencing effects and competitive relationships of YOYO-1 on the binding properties of the ctDNA-DOX complex. The interaction sites and modes of action between the YOYO-1 and the ctDNA-DOX complex are systematically examined, and the DOX with the ctDNA-YOYO-1 are compared, and the impact of YOYO-1 on the stability of the ctDNA-DOX complex and the competitive mechanism between DOX and YOYO-1 acting with DNA molecules are elucidated. This study has helpful experimental guidance and a theoretical foundation to expound the mechanism of interaction between drugs and biomolecules at the single-molecule level. |
关键词 | SERS molecular docking method drug molecule binding site competitive mechanism |
DOI | 10.3390/ijms25073804 |
收录类别 | SCI |
语种 | 英语 |
WOS记录号 | WOS:001201015200001 |
出版者 | MDPI |
引用统计 | |
文献类型 | 期刊论文 |
条目标识符 | http://ir.opt.ac.cn/handle/181661/97391 |
专题 | 瞬态光学研究室 |
通讯作者 | Wang, Kaige |
作者单位 | 1.Northwest Univ, Inst Photon & Photon Technol, Natl Ctr Int Res Photoelect Technol & Nanofunct Ma, Key Lab Photoelect Technol Shaanxi Prov, Xian 710127, Peoples R China 2.Chinese Acad Sci, State Key Lab Transient Opt & Photon, Xian Inst Opt & Precis Mech, Xian 710119, Peoples R China |
推荐引用方式 GB/T 7714 | Li, Yanjie,Li, Zhiwei,Yun, Penglun,et al. Studying the Effects and Competitive Mechanisms of YOYO-1 on the Binding Characteristics of DOX and DNA Molecules Based on Surface-Enhanced Raman Spectroscopy and Molecular Docking Techniques[J]. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES,2024,25(7). |
APA | Li, Yanjie.,Li, Zhiwei.,Yun, Penglun.,Sun, Dan.,Niu, Yong.,...&Wang, Kaige.(2024).Studying the Effects and Competitive Mechanisms of YOYO-1 on the Binding Characteristics of DOX and DNA Molecules Based on Surface-Enhanced Raman Spectroscopy and Molecular Docking Techniques.INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES,25(7). |
MLA | Li, Yanjie,et al."Studying the Effects and Competitive Mechanisms of YOYO-1 on the Binding Characteristics of DOX and DNA Molecules Based on Surface-Enhanced Raman Spectroscopy and Molecular Docking Techniques".INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES 25.7(2024). |
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