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Transformer-based factorized encoder for classification of pneumoconiosis on 3D CT images
Huang, Yingying1,2,3; Si, Yang4,5,6; Hu, Bingliang3; Zhang, Yan7,8; Wu, Shuang7,8; Wu, Dongsheng7,8,9; Wang, Quan1,3
作者部门光谱成像技术研究室
2022-11
发表期刊COMPUTERS IN BIOLOGY AND MEDICINE
ISSN0010-4825;1879-0534
卷号150
产权排序1
摘要

In the past decade, deep learning methods have been implemented in the medical image fields and have achieved good performance. Recently, deep learning algorithms have been successful in the evaluation of diagnosis on lung images. Although chest radiography (CR) is the standard data modality for diagnosing pneumoconiosis, computed tomography (CT) typically provides more details of the lesions in the lung. Thus, a transformer-based factorized encoder (TBFE) was proposed and first applied for the classification of pneumoconiosis depicted on 3D CT images. Specifically, a factorized encoder consists of two transformer encoders. The first transformer encoder enables the interaction of intra-slice by encoding feature maps from the same slice of CT. The second transformer encoder explores the inter-slice interaction by encoding feature maps from different slices. In addition, the lack of grading standards on CT for labeling the pneumoconiosis lesions. Thus, an acknowledged CR-based grading system was applied to mark the corresponding pneumoconiosis CT stage. Then, we pre-trained the 3D convolutional autoencoder on the public LIDC-IDRI dataset and fixed the parameters of the last convolutional layer of the encoder to extract CT feature maps with underlying spatial structural information from our 3D CT dataset. Experimental results demonstrated the superiority of the TBFE over other 3D-CNN networks, achieving an accuracy of 97.06%, a recall of 89.33%, precision of 90%, and an F1-score of 93.33%, using 10-fold cross-validation.

关键词Transformer-based factorized encoder 3D convolutional autoencoder Intra-slice interaction Inter-slice interaction
DOI10.1016/j.compbiomed.2022.106137
收录类别SCI
语种英语
WOS记录号WOS:000878510400003
出版者PERGAMON-ELSEVIER SCIENCE LTD
引用统计
被引频次:8[WOS]   [WOS记录]     [WOS相关记录]
文献类型期刊论文
条目标识符http://ir.opt.ac.cn/handle/181661/96235
专题光谱成像技术研究室
通讯作者Wu, Dongsheng; Wang, Quan
作者单位1.Chinese Acad Sci, Xian Inst Opt & Precis Mech, Key Lab Spectral Imaging Technol, Xian 710119, Shanxi, Peoples R China
2.Univ Chinese Acad Sci, Beijing 100049, Peoples R China
3.Key Lab Biomed Spect, Xian 710119, Shanxi, Peoples R China
4.Sichuan Acad Med Sci, China, Sichuan, Peoples R China
5.Sichuan Prov Peoples Hosp, Dept Neurol, Chengdu, Sichuan, Peoples R China
6.Univ Elect Sci & Technol China, Chengdu, Sichuan, Peoples R China
7.Sichuan Univ, West China Sch Publ Hlth, Dept Radiol, Chengdu, Sichuan, Peoples R China
8.Sichuan Univ, West China Hosp 4, Chengdu, Sichuan, Peoples R China
9.Sichuan Univ, Res Ctr Artificial Intelligence Med, West China PUMC CC Chen Inst Hlth, Chengdu, Sichuan, Peoples R China
推荐引用方式
GB/T 7714
Huang, Yingying,Si, Yang,Hu, Bingliang,et al. Transformer-based factorized encoder for classification of pneumoconiosis on 3D CT images[J]. COMPUTERS IN BIOLOGY AND MEDICINE,2022,150.
APA Huang, Yingying.,Si, Yang.,Hu, Bingliang.,Zhang, Yan.,Wu, Shuang.,...&Wang, Quan.(2022).Transformer-based factorized encoder for classification of pneumoconiosis on 3D CT images.COMPUTERS IN BIOLOGY AND MEDICINE,150.
MLA Huang, Yingying,et al."Transformer-based factorized encoder for classification of pneumoconiosis on 3D CT images".COMPUTERS IN BIOLOGY AND MEDICINE 150(2022).
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